write_tool

Save AnnData objects to files in formats like h5, csv, txt, or npz. Specify file paths, extensions, and compression options for efficient data storage.

Instructions

Write AnnData objects to file.

Input Schema

Name	Required	Description	Default
`compression`	No	Compression format for h5 files.	gzip
`compression_opts`	No	Compression options for h5 files.
`ext`	No	File extension to infer file format. If None, defaults to scanpy's settings.file_format_data.
`filename`	Yes	Path to save the file. If no extension is provided, the default format will be used.

Input Schema (JSON Schema)

{
  "description": "Input schema for the write tool.",
  "properties": {
    "compression": {
      "anyOf": [
        {
          "enum": [
            "gzip",
            "lzf"
          ],
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": "gzip",
      "description": "Compression format for h5 files.",
      "title": "Compression"
    },
    "compression_opts": {
      "anyOf": [
        {
          "type": "integer"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Compression options for h5 files.",
      "title": "Compression Opts"
    },
    "ext": {
      "anyOf": [
        {
          "enum": [
            "h5",
            "csv",
            "txt",
            "npz"
          ],
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "File extension to infer file format. If None, defaults to scanpy's settings.file_format_data.",
      "title": "Ext"
    },
    "filename": {
      "description": "Path to save the file. If no extension is provided, the default format will be used.",
      "title": "Filename",
      "type": "string"
    }
  },
  "required": [
    "filename"
  ],
  "title": "WriteModel",
  "type": "object"
}

SCMCP

write_tool

Instructions

Input Schema

Input Schema (JSON Schema)

Other Tools from SCMCP

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MCP directory API