pl_pca

Name	Required	Description	Default
`add_outline`	No	Add outline to scatter plot points.
`annotate_var_explained`	No	Annotate the explained variance.
`arrows`	No	Show arrows.
`color`	No	Keys for annotations of observations/cells or variables/genes.
`color_map`	No	Color map to use for continuous variables.
`components`	No	For instance, ['1,2', '2,3']. To plot all available components use components='all'.
`dimensions`	No	0-indexed dimensions of the embedding to plot as integers. E.g. [(0, 1), (1, 2)].
`edges`	No	Show edges between nodes.
`edges_color`	No	Color of edges.	grey
`edges_width`	No	Width of edges.
`figsize`	No	Figure size. Format is (width, height).
`frameon`	No	Draw a frame around the scatter plot.
`gene_symbols`	No	Column name in .var DataFrame that stores gene symbols.
`groups`	No	Restrict to a few categories in categorical observation annotation.
`layer`	No	Name of the AnnData object layer that wants to be plotted.
`legend_fontoutline`	No	Line width of the legend font outline in pt.
`legend_fontsize`	No	Numeric size in pt or string describing the size.
`legend_fontweight`	No	Legend font weight. A numeric value in range 0-1000 or a string.	bold
`legend_loc`	No	Location of legend, either 'on data', 'right margin' or a valid keyword for the loc parameter.	right margin
`marker`	No	Matplotlib marker style for points.	.
`ncols`	No	Number of columns for multiple plots.
`neighbors_key`	No	Where to look for neighbors connectivities.
`palette`	No	Colors to use for plotting categorical annotation groups.
`projection`	No	Projection of plot.	2d
`size`	No	Point size. If None, is automatically computed.
`sort_order`	No	For continuous annotations used as color parameter, plot data points with higher values on top of others.
`use_raw`	No	Use .raw attribute of adata for coloring with gene expression.
`vcenter`	No	The value representing the center of the color scale.
`vmax`	No	The value representing the upper limit of the color scale.
`vmin`	No	The value representing the lower limit of the color scale.

{
  "description": "Input schema for the PCA plotting tool.",
  "properties": {
    "add_outline": {
      "anyOf": [
        {
          "type": "boolean"
        },
        {
          "type": "null"
        }
      ],
      "default": false,
      "description": "Add outline to scatter plot points.",
      "title": "Add Outline"
    },
    "annotate_var_explained": {
      "default": false,
      "description": "Annotate the explained variance.",
      "title": "Annotate Var Explained",
      "type": "boolean"
    },
    "arrows": {
      "default": false,
      "description": "Show arrows.",
      "title": "Arrows",
      "type": "boolean"
    },
    "color": {
      "anyOf": [
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Keys for annotations of observations/cells or variables/genes.",
      "title": "Color"
    },
    "color_map": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Color map to use for continuous variables.",
      "title": "Color Map"
    },
    "components": {
      "anyOf": [
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "For instance, ['1,2', '2,3']. To plot all available components use components='all'.",
      "title": "Components"
    },
    "dimensions": {
      "anyOf": [
        {
          "maxItems": 2,
          "minItems": 2,
          "prefixItems": [
            {
              "type": "integer"
            },
            {
              "type": "integer"
            }
          ],
          "type": "array"
        },
        {
          "items": {
            "maxItems": 2,
            "minItems": 2,
            "prefixItems": [
              {
                "type": "integer"
              },
              {
                "type": "integer"
              }
            ],
            "type": "array"
          },
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "0-indexed dimensions of the embedding to plot as integers. E.g. [(0, 1), (1, 2)].",
      "title": "Dimensions"
    },
    "edges": {
      "default": false,
      "description": "Show edges between nodes.",
      "title": "Edges",
      "type": "boolean"
    },
    "edges_color": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "items": {
            "type": "number"
          },
          "type": "array"
        },
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        }
      ],
      "default": "grey",
      "description": "Color of edges.",
      "title": "Edges Color"
    },
    "edges_width": {
      "default": 0.1,
      "description": "Width of edges.",
      "title": "Edges Width",
      "type": "number"
    },
    "figsize": {
      "anyOf": [
        {
          "maxItems": 2,
          "minItems": 2,
          "prefixItems": [
            {
              "type": "number"
            },
            {
              "type": "number"
            }
          ],
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Figure size. Format is (width, height).",
      "title": "Figsize"
    },
    "frameon": {
      "anyOf": [
        {
          "type": "boolean"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Draw a frame around the scatter plot.",
      "title": "Frameon"
    },
    "gene_symbols": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Column name in .var DataFrame that stores gene symbols.",
      "title": "Gene Symbols"
    },
    "groups": {
      "anyOf": [
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Restrict to a few categories in categorical observation annotation.",
      "title": "Groups"
    },
    "layer": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Name of the AnnData object layer that wants to be plotted.",
      "title": "Layer"
    },
    "legend_fontoutline": {
      "anyOf": [
        {
          "type": "integer"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Line width of the legend font outline in pt.",
      "title": "Legend Fontoutline"
    },
    "legend_fontsize": {
      "anyOf": [
        {
          "type": "integer"
        },
        {
          "type": "number"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Numeric size in pt or string describing the size.",
      "title": "Legend Fontsize"
    },
    "legend_fontweight": {
      "anyOf": [
        {
          "type": "integer"
        },
        {
          "type": "string"
        }
      ],
      "default": "bold",
      "description": "Legend font weight. A numeric value in range 0-1000 or a string.",
      "title": "Legend Fontweight"
    },
    "legend_loc": {
      "default": "right margin",
      "description": "Location of legend, either 'on data', 'right margin' or a valid keyword for the loc parameter.",
      "title": "Legend Loc",
      "type": "string"
    },
    "marker": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        }
      ],
      "default": ".",
      "description": "Matplotlib marker style for points.",
      "title": "Marker"
    },
    "ncols": {
      "default": 4,
      "description": "Number of columns for multiple plots.",
      "title": "Ncols",
      "type": "integer"
    },
    "neighbors_key": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Where to look for neighbors connectivities.",
      "title": "Neighbors Key"
    },
    "palette": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "additionalProperties": {
            "type": "string"
          },
          "type": "object"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Colors to use for plotting categorical annotation groups.",
      "title": "Palette"
    },
    "projection": {
      "default": "2d",
      "description": "Projection of plot.",
      "enum": [
        "2d",
        "3d"
      ],
      "title": "Projection",
      "type": "string"
    },
    "size": {
      "anyOf": [
        {
          "type": "number"
        },
        {
          "items": {
            "type": "number"
          },
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Point size. If None, is automatically computed.",
      "title": "Size"
    },
    "sort_order": {
      "default": true,
      "description": "For continuous annotations used as color parameter, plot data points with higher values on top of others.",
      "title": "Sort Order",
      "type": "boolean"
    },
    "use_raw": {
      "anyOf": [
        {
          "type": "boolean"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Use .raw attribute of adata for coloring with gene expression.",
      "title": "Use Raw"
    },
    "vcenter": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "number"
        },
        {
          "items": {
            "anyOf": [
              {
                "type": "string"
              },
              {
                "type": "number"
              }
            ]
          },
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "The value representing the center of the color scale.",
      "title": "Vcenter"
    },
    "vmax": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "number"
        },
        {
          "items": {
            "anyOf": [
              {
                "type": "string"
              },
              {
                "type": "number"
              }
            ]
          },
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "The value representing the upper limit of the color scale.",
      "title": "Vmax"
    },
    "vmin": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "number"
        },
        {
          "items": {
            "anyOf": [
              {
                "type": "string"
              },
              {
                "type": "number"
              }
            ]
          },
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "The value representing the lower limit of the color scale.",
      "title": "Vmin"
    }
  },
  "title": "PCAModel",
  "type": "object"
}

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