ingest
Map labels and embeddings from reference data to new data using specified labeling and embedding methods, supported by the SCMCP server for single-cell RNA sequencing analysis.
Instructions
Map labels and embeddings from reference data to new data
Input Schema
Name | Required | Description | Default |
---|---|---|---|
embedding_method | No | Embeddings in adata_ref which need to be mapped to adata. The only supported values are 'umap' and 'pca'. | |
labeling_method | No | The method to map labels in adata_ref.obs to adata.obs. The only supported value is 'knn'. | knn |
neighbors_key | No | If specified, ingest looks adata_ref.uns[neighbors_key] for neighbors settings and uses the corresponding distances. | |
obs | No | Labels' keys in adata_ref.obs which need to be mapped to adata.obs (inferred for observation of adata). |