pl_scatter

Instructions

Plot a scatter plot of two variables, Scatter plot along observations or variables axes.

Input Schema

Name	Required	Description	Default
`alpha`	No	Alpha value for the plot.
`basis`	No	Basis to use for embedding.
`color`	No	Keys for annotations of observations/cells or variables/genes, or a hex color specification.
`color_map`	No	Color map to use for continuous variables.
`components`	No	For instance, ['1,2', '2,3']. To plot all available components use components='all'.
`figsize`	No	Figure size. Format is (width, height).
`groups`	No	Restrict to a few categories in categorical observation annotation.
`layers`	No	Use the layers attribute of adata if present: specify the layer for x, y and color.
`left_margin`	No	Adjust the width of the left margin.
`legend_fontoutline`	No	Line width of the legend font outline in pt.
`legend_fontsize`	No	Numeric size in pt or string describing the size.
`legend_fontweight`	No	Legend font weight. A numeric value in range 0-1000 or a string.	bold
`legend_loc`	No	Location of legend, either 'on data', 'right margin' or a valid keyword for the loc parameter.	right margin
`palette`	No	Colors to use for plotting categorical annotation groups.
`projection`	No	Projection of plot.	2d
`right_margin`	No	Adjust the width of the right margin.
`sort_order`	No	For continuous annotations used as color parameter, plot data points with higher values on top of others.
`use_raw`	No	Whether to use raw attribute of adata. Defaults to True if .raw is present.
`vcenter`	No	The value representing the center of the color scale.
`vmax`	No	The value representing the upper limit of the color scale.
`vmin`	No	The value representing the lower limit of the color scale.
`x`	No	x coordinate.
`y`	No	y coordinate.

Input Schema (JSON Schema)

{
  "description": "Input schema for the enhanced scatter plotting tool.",
  "properties": {
    "alpha": {
      "anyOf": [
        {
          "maximum": 1,
          "minimum": 0,
          "type": "number"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Alpha value for the plot.",
      "title": "Alpha"
    },
    "basis": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Basis to use for embedding.",
      "title": "Basis"
    },
    "color": {
      "anyOf": [
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Keys for annotations of observations/cells or variables/genes, or a hex color specification.",
      "title": "Color"
    },
    "color_map": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Color map to use for continuous variables.",
      "title": "Color Map"
    },
    "components": {
      "anyOf": [
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "For instance, ['1,2', '2,3']. To plot all available components use components='all'.",
      "title": "Components"
    },
    "figsize": {
      "anyOf": [
        {
          "maxItems": 2,
          "minItems": 2,
          "prefixItems": [
            {
              "type": "number"
            },
            {
              "type": "number"
            }
          ],
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Figure size. Format is (width, height).",
      "title": "Figsize"
    },
    "groups": {
      "anyOf": [
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Restrict to a few categories in categorical observation annotation.",
      "title": "Groups"
    },
    "layers": {
      "anyOf": [
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Use the layers attribute of adata if present: specify the layer for x, y and color.",
      "title": "Layers"
    },
    "left_margin": {
      "anyOf": [
        {
          "type": "number"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Adjust the width of the left margin.",
      "title": "Left Margin"
    },
    "legend_fontoutline": {
      "anyOf": [
        {
          "type": "integer"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Line width of the legend font outline in pt.",
      "title": "Legend Fontoutline"
    },
    "legend_fontsize": {
      "anyOf": [
        {
          "type": "integer"
        },
        {
          "type": "number"
        },
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Numeric size in pt or string describing the size.",
      "title": "Legend Fontsize"
    },
    "legend_fontweight": {
      "anyOf": [
        {
          "type": "integer"
        },
        {
          "type": "string"
        }
      ],
      "default": "bold",
      "description": "Legend font weight. A numeric value in range 0-1000 or a string.",
      "title": "Legend Fontweight"
    },
    "legend_loc": {
      "default": "right margin",
      "description": "Location of legend, either 'on data', 'right margin' or a valid keyword for the loc parameter.",
      "title": "Legend Loc",
      "type": "string"
    },
    "palette": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "additionalProperties": {
            "type": "string"
          },
          "type": "object"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Colors to use for plotting categorical annotation groups.",
      "title": "Palette"
    },
    "projection": {
      "default": "2d",
      "description": "Projection of plot.",
      "enum": [
        "2d",
        "3d"
      ],
      "title": "Projection",
      "type": "string"
    },
    "right_margin": {
      "anyOf": [
        {
          "type": "number"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Adjust the width of the right margin.",
      "title": "Right Margin"
    },
    "sort_order": {
      "default": true,
      "description": "For continuous annotations used as color parameter, plot data points with higher values on top of others.",
      "title": "Sort Order",
      "type": "boolean"
    },
    "use_raw": {
      "anyOf": [
        {
          "type": "boolean"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Whether to use raw attribute of adata. Defaults to True if .raw is present.",
      "title": "Use Raw"
    },
    "vcenter": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "number"
        },
        {
          "items": {
            "anyOf": [
              {
                "type": "string"
              },
              {
                "type": "number"
              }
            ]
          },
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "The value representing the center of the color scale.",
      "title": "Vcenter"
    },
    "vmax": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "number"
        },
        {
          "items": {
            "anyOf": [
              {
                "type": "string"
              },
              {
                "type": "number"
              }
            ]
          },
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "The value representing the upper limit of the color scale.",
      "title": "Vmax"
    },
    "vmin": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "number"
        },
        {
          "items": {
            "anyOf": [
              {
                "type": "string"
              },
              {
                "type": "number"
              }
            ]
          },
          "type": "array"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "The value representing the lower limit of the color scale.",
      "title": "Vmin"
    },
    "x": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "x coordinate.",
      "title": "X"
    },
    "y": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "y coordinate.",
      "title": "Y"
    }
  },
  "title": "EnhancedScatterModel",
  "type": "object"
}

SCMCP

Instructions

Input Schema

Input Schema (JSON Schema)

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