SCMCP

Instructions

Implementation Reference

• src/scmcp/tool/ccc.py:49-50 (handler)

  The handler function that lists available cell-cell communication methods by calling liana.mt.show_methods() and converting the result to a string.
  def ls_ccc_method(): return str(li.mt.show_methods())
• src/scmcp/schema/ccc.py:6-8 (schema)

  Pydantic model defining the input schema for the ls_ccc_method tool. It is empty since the tool requires no input parameters.
  class ListCCCMethodModel(JSONParsingModel): """ListCCCMethodModel""" pass
• src/scmcp/tool/ccc.py:15-19 (registration)

  Definition of the MCP Tool object for 'ls_ccc_method', including name, description, and input schema.
  ls_ccc_method_tool = types.Tool( name="ls_ccc_method", description="List cell-cell communication method.", inputSchema=ListCCCMethodModel.model_json_schema(), )
• src/scmcp/tool/ccc.py:92-98 (registration)

  Dictionary registering the handler function for 'ls_ccc_method' (and other CCC tools) to be used in the dispatcher.
  ccc_func = { "ls_ccc_method": ls_ccc_method, "ccc_rank_aggregate": li.mt.rank_aggregate, "ccc_circle_plot": plot_circleplot, "ccc_dot_plot": plot_dotplot, "ccc": run_ccc, }
• src/scmcp/tool/ccc.py:100-106 (registration)

  Dictionary registering the Tool objects for 'ls_ccc_method' (and other CCC tools), used by the MCP server for listing and calling.
  ccc_tools = { "ls_ccc_method": ls_ccc_method_tool, "ccc_rank_aggregate": rank_aggregate_tool, "ccc_circle_plot": circle_plot_tool, "ccc_dot_plot": dot_plot_tool, "ccc": ccc_tool, }