SCMCP

{ "description": "Input schema for the score_genes_cell_cycle tool that scores cell cycle genes.", "properties": { "g2m_genes": { "description": "List of genes associated with G2M phase.", "items": { "type": "string" }, "title": "G2M Genes", "type": "array" }, "gene_pool": { "anyOf": [ { "items": { "type": "string" }, "type": "array" }, { "type": "null" } ], "default": null, "description": "Genes for sampling the reference set. Default is all genes.", "title": "Gene Pool" }, "n_bins": { "default": 25, "description": "Number of expression level bins for sampling.", "exclusiveMinimum": 0, "title": "N Bins", "type": "integer" }, "random_state": { "default": 0, "description": "The random seed for sampling.", "title": "Random State", "type": "integer" }, "s_genes": { "description": "List of genes associated with S phase.", "items": { "type": "string" }, "title": "S Genes", "type": "array" }, "score_name": { "anyOf": [ { "type": "string" }, { "type": "null" } ], "default": null, "description": "Name of the field to be added in .obs. If None, the scores are added as 'S_score' and 'G2M_score'.", "title": "Score Name" }, "use_raw": { "anyOf": [ { "type": "boolean" }, { "type": "null" } ], "default": null, "description": "Whether to use raw attribute of adata. Defaults to True if .raw is present.", "title": "Use Raw" } }, "required": [ "s_genes", "g2m_genes" ], "title": "ScoreGenesCellCycleModel", "type": "object" }