regress_out

Remove unwanted sources of variation in single-cell RNA sequencing data by regressing out specified observation annotations, enhancing downstream analysis accuracy.

Instructions

Regress out (mostly) unwanted sources of variation.

Input Schema

Name	Required	Description
`keys`	Yes	Keys for observation annotation on which to regress on.
`layer`	No	If provided, which element of layers to regress on.
`n_jobs`	No	Number of jobs for parallel computation.

Input Schema (JSON Schema)

{
  "description": "Input schema for the regress_out preprocessing tool.",
  "properties": {
    "keys": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        }
      ],
      "description": "Keys for observation annotation on which to regress on.",
      "title": "Keys"
    },
    "layer": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "If provided, which element of layers to regress on.",
      "title": "Layer"
    },
    "n_jobs": {
      "anyOf": [
        {
          "exclusiveMinimum": 0,
          "type": "integer"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Number of jobs for parallel computation.",
      "title": "N Jobs"
    }
  },
  "required": [
    "keys"
  ],
  "title": "RegressOutModel",
  "type": "object"
}

SCMCP

regress_out

Instructions

Input Schema

Input Schema (JSON Schema)

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MCP directory API