SCMCP

{ "description": "Input schema for the marker gene overlap tool.", "properties": { "adj_pval_threshold": { "anyOf": [ { "exclusiveMinimum": 0, "maximum": 1, "type": "number" }, { "type": "null" } ], "default": null, "description": "A significance threshold on the adjusted p-values to select marker genes.", "title": "Adj Pval Threshold" }, "key": { "default": "rank_genes_groups", "description": "The key in adata.uns where the rank_genes_groups output is stored.", "title": "Key", "type": "string" }, "key_added": { "default": "marker_gene_overlap", "description": "Name of the .uns field that will contain the marker overlap scores.", "title": "Key Added", "type": "string" }, "method": { "default": "overlap_count", "description": "Method to calculate marker gene overlap: 'overlap_count', 'overlap_coef', or 'jaccard'.", "title": "Method", "type": "string" }, "normalize": { "anyOf": [ { "enum": [ "reference", "data" ], "type": "string" }, { "type": "null" } ], "default": null, "description": "Normalization option for the marker gene overlap output. Only applicable when method is 'overlap_count'.", "title": "Normalize" }, "top_n_markers": { "anyOf": [ { "exclusiveMinimum": 0, "type": "integer" }, { "type": "null" } ], "default": null, "description": "The number of top data-derived marker genes to use. By default the top 100 marker genes are used.", "title": "Top N Markers" } }, "title": "MarkerGeneOverlapModel", "type": "object" }