Skip to main content
Glama

Chemical Compound Properties

chemistry.pubchem.properties
Read-onlyIdempotent

Retrieve full physical and chemical properties for a compound by PubChem CID, including molecular formula, weight, SMILES, InChI, and more.

Instructions

Get full physical and chemical properties for a compound by PubChem CID — molecular formula, weight, SMILES, InChI, InChIKey, XLogP, H-bond donors/acceptors, exact mass, topological polar surface area, complexity, charge, heavy atom count (PubChem / NCBI)

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
cidYesPubChem Compound ID (CID) — get from compound_search results

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultNoTool response payload. Shape varies per tool — consult the tool description and inputSchema. May be an object, array, string, or number depending on the upstream provider response.
errorNoPresent only when the call failed. Includes error code, message, request_id, and any provider-specific extras.
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, destructiveHint, idempotentHint, openWorldHint. Description adds specific property names returned but no additional behavioral traits like rate limits or auth. No contradiction.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Single sentence with purpose front-loaded, followed by a dash and list of properties. No redundant words, efficient structure.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Tool is simple with one parameter and output schema present. Description fully informs about what properties are returned, sufficient for an agent to use correctly without further elaboration.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema provides 100% description coverage for the single parameter 'cid'. Description adds a usage hint ('get from compound_search results') but minimal new meaning beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description uses specific verb 'Get' and resource 'full physical and chemical properties for a compound by PubChem CID'. It lists extensive property categories, clearly distinguishing from sibling tools like search or synonyms.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description implies usage when you have a CID and need properties, but does not explicitly state when to use vs. alternatives like search or bioassays, nor provide exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/whiteknightonhorse/APIbase'

If you have feedback or need assistance with the MCP directory API, please join our Discord server