Skip to main content
Glama

Compound Bioactivity Summary

chemistry.pubchem.bioassays
Read-onlyIdempotent

Retrieve bioactivity assay results for a compound: active/inactive counts, tested targets, and assay types. Shows biological test performance across thousands of PubChem assays.

Instructions

Get bioactivity assay results for a compound — active/inactive counts, tested targets, assay types. Shows how the compound performed in biological tests across thousands of assays (PubChem / NCBI)

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
cidYesPubChem Compound ID (CID) — returns bioactivity assay results (active/inactive counts, targets)

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultNoTool response payload. Shape varies per tool — consult the tool description and inputSchema. May be an object, array, string, or number depending on the upstream provider response.
errorNoPresent only when the call failed. Includes error code, message, request_id, and any provider-specific extras.
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, destructiveHint=false, idempotentHint=true. The description adds context about data scope ('thousands of assays') but does not disclose additional behavioral details beyond what annotations provide, nor does it contradict them.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences, front-loaded with key information, and contains no unnecessary words. Every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simple schema, rich annotations, and existence of an output schema, the description adequately covers the tool's behavior and output. Minor omission: no note on invalid CID handling, but not critical for a read-only tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with a well-described parameter (cid). The description reinforces the parameter's purpose but does not add new semantic meaning beyond the schema description.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool retrieves bioactivity assay results (active/inactive counts, tested targets, assay types) for a compound, specifying the source (PubChem/NCBI). It distinguishes from sibling tools focused on other chemical data aspects.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for biological test performance but provides no explicit guidance on when to use this tool versus alternatives like other PubChem tools. No exclusions or comparisons are mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/whiteknightonhorse/APIbase'

If you have feedback or need assistance with the MCP directory API, please join our Discord server