Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
With no annotations, the description carries the full burden. It states the basic function but does not disclose important behavioral traits: what color scheme is used (e.g., CPK), whether it overrides existing colors, if it affects all atoms or just the selection, or whether it's idempotent. The parameter 'selection' is not mentioned, leaving its effect unclear.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.