crosslink_view
Highlights disulfide bonds and metal-ion coordination in a PyMOL structure, showing labeled cysteine side chains, yellow bond dashes, and orange metal spheres for structural inspection.
Instructions
Highlights structural cross-links: disulfide bonds, metals, and their coordination.
Protein backbone shown as a thin grey cartoon. Cysteine side chains (CA→CB→SG) shown as yellow sticks, labeled by residue. Disulfide bonds drawn as yellow dashes. Metal ions shown as orange spheres. Metal coordination bonds drawn as dashed lines to nearby protein atoms. Black background.
Tool call template
Replace each placeholder with a value matching the input schema. Only required parameters are included; add optional parameters as needed.
{
"id": 1,
"jsonrpc": "2.0",
"method": "tools/call",
"params": {
"arguments": {
"obj_name": "<obj_name>"
},
"name": "crosslink_view"
}
}Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| obj_name | Yes | PyMOL object name (e.g. "1abc") |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |