Skip to main content
Glama

as

Set a single representation for a molecular selection, hiding all others, to focus the view on cartoon, sticks, spheres, or surface.

Instructions

Shows one representation while hiding all others for the specified selection

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
selectionNoPyMOL selection string, e.g. "1abc and chain A". See the module note for syntax.all
representationYesThe one representation to leave visible: ``cartoon``, ``sticks``, ``spheres``, ``surface``, ``lines``, ``ribbon``, ``dots``, ``mesh``.

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It discloses the core behavior (one shown, all others hidden) and scoping to a selection, but does not mention side effects like whether this is reversible, affects camera, or applies to all objects. This is acceptable but not rich.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single concise sentence that front-loads the primary purpose. Every word adds value with no extraneous information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

This is a simple tool with two parameters, an output schema, and a clear core purpose. The description is sufficient for an agent to understand the tool's function, though it could benefit from a brief note about when to prefer 'as' over 'show'/'hide'.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so the schema already documents both parameters well. The description adds no additional semantic detail beyond what the schema provides, hence the baseline score.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb+resource structure: 'Shows one representation while hiding all others for the specified selection'. This clearly distinguishes it from siblings like 'show' or 'hide' by describing the combined action of isolating a single representation.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The context is clear: use this when you want to display exactly one representation for a selection. However, it does not explicitly mention alternatives or exclusions, though the sibling list includes related tools like 'show' and 'hide' that could serve similar purposes.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/chemrich/MCPymol'

If you have feedback or need assistance with the MCP directory API, please join our Discord server