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util_cbac

Recolor molecules by atom type, setting carbons to cyan for clearer structural visualization in PyMOL.

Instructions

Colors by atom, cyan carbons (Color By Atom, Cyan)

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
selectionNoWhat to recolour. Defaults to everything.all

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full responsibility. It discloses the core behavior (coloring by atom with cyan carbons) but does not mention whether it overrides existing colors, affects only selected atoms, or has other side effects. This is minimal but not misleading.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very short and front-loaded with the key information. However, the parenthetical '(Color By Atom, Cyan)' redundantly restates the preceding phrase, which slightly reduces efficiency.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The tool is simple with one optional parameter and an output schema, but the description does not differentiate among the many similar util_cb* siblings. Agents may struggle to choose this tool over alternatives without additional context. The description is minimally viable but not complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema already provides a complete description for the single 'selection' parameter ('What to recolour. Defaults to everything.'). The tool description adds no additional parameter semantics, so the baseline of 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's action: coloring by atom with cyan carbons. It distinguishes itself from sibling color tools by explicitly naming the cyan carbon scheme, making the purpose unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is given on when to use this tool versus alternatives. With many sibling color utilities (e.g., util_cbc, util_cbaw, color), the description fails to explain selection criteria or scenarios where this specific tool is preferred.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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