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list_chains

Retrieve chain IDs from a PyMOL object to identify chains for further analysis like interface or conservation views.

Instructions

Lists the chain IDs present in an object (or in all objects).

Useful before calling :func:interface_view, :func:conservation_view or any tool that needs a specific chain ID.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
obj_nameNoall

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It does not disclose any behavioral traits beyond the basic function, such as side effects, read-only nature, or error handling. For a simple read operation, more detail is expected.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences long, front-loading the purpose with the verb and resource, and every sentence adds value. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The tool has one parameter and an output schema (assumed). The description adequately explains its purpose and when to use it, covering the essential context for an agent. It could be more precise about the parameter, but overall it is sufficient.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description references the single parameter ('obj_name') by mentioning 'object (or in all objects)', adding some meaning beyond the schema. However, it does not explain the default value 'all' or the format expected. Given 0% schema description coverage, this partial clarification is adequate but not strong.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool lists chain IDs in an object or all objects, using a specific verb and resource. It distinguishes itself from sibling tools like list_ligands and list_objects, which cover different entities.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states it is useful before calling certain functions (interface_view, conservation_view) that require a chain ID, providing clear context for when to use. It does not, however, explicitly state when not to use it or mention alternative tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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