qscore_view
Color a PyMOL model by per-residue Q-scores from its wwPDB validation report, using published numbers without network or computation.
Instructions
Colour a model by per-residue Q-score parsed from its wwPDB validation report.
No network, no map, and no computation — Q-scores are already published, and this reads the numbers rather than re-deriving them.
Two things to expect from real data: entries deposited before the September 2023 validation rollout carry no Q-scores at all, which is the common case for older EM structures; and real Q-scores go negative, so the published 0–1 framing is the intended range and not the observed one.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| obj_name | Yes | PyMOL object name (e.g. "9c0k") | |
| validation_path | Yes | Path to a wwPDB validation report (mmCIF or XML, optionally gzipped) for this entry | |
| preserve_bfactors | No | Stash the original B-factors before overwriting them (default True) |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |