system
Run system commands directly to control PyMOL operations through an AI assistant.
Instructions
Executes a system command
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| command | Yes |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |
Run system commands directly to control PyMOL operations through an AI assistant.
Executes a system command
| Name | Required | Description | Default |
|---|---|---|---|
| command | Yes |
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
No annotations are provided, so the description carries the full burden. It does not disclose potential dangers, side effects, required permissions, or error behavior. For a system command tool, this is a significant deficiency.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is a single sentence, which is concise but under-specified. It omits critical information, making it inadequate rather than concise.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
Despite having an output schema, the description does not explain return values or behavior. No information about error handling, execution context, or limitations. Completely incomplete for a system command tool.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
Schema description coverage is 0%. The description only implies that the 'command' parameter is the command to execute, adding no extra meaning beyond the schema. It does not specify format, syntax, or how to handle arguments.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
Description clearly states 'Executes a system command', which is a specific verb and resource. However, it does not distinguish this tool from sibling tools, which are mostly PyMOL-specific commands.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
No guidance on when to use this tool or when to avoid it. For a system command execution, security considerations and alternatives (if any) should be mentioned.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
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curl -X GET 'https://glama.ai/api/mcp/v1/servers/chemrich/MCPymol'
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