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alter_state

Modify atomic coordinates in a specified state using an expression. Select atoms and apply coordinate assignments.

Instructions

Alters atomic coordinates in a state

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
stateYesState to modify.
selectionYesAtoms to modify.
expressionYesAssignment over coordinates, e.g. ``x=x+10``.

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden of behavioral disclosure. It only states that coordinates are altered, which is the core behavior, but doesn't disclose side effects, reversibility, or any caveats. This is minimal for a mutation tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence with no redundancy and is appropriately concise. However, it's a bit too sparse to fully explain the tool's capabilities.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool is a mutation with three required parameters and no annotations, the description is insufficiently complete. It doesn't explain the expression syntax, effect on the state, or any prerequisites. The minimal text leaves significant gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema covers all three parameters with descriptions, so the baseline is 3. The tool description adds no additional parameter information beyond what the schema already provides.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool modifies atomic coordinates in a state, which is a specific verb+resource. However, it doesn't distinguish it from sibling tools like 'alter' or other modification commands, so it doesn't earn a 5.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool versus alternatives. It simply states the action with no mention of context, prerequisites, or exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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