Tools for computational analysis of biological data, including genomics, proteomics, and other molecular biology data. Enables access to bioinformatics pipelines, algorithms, and databases.
Helena Bioinformatics MCP for clinical variant interpretation, ACMG/AMP evidence and literature.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
InterPro MCP (EBI) — protein family / domain / functional-site classification.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
RCSB PDB MCP — experimentally determined macromolecular structures.
Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.
WikiPathways MCP — open community pathway database.
MetaboLights MCP — EBI's metabolomics study repository.
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
Query CAN-IMMUNE: cancer neoantigen mutations, peptides, cell lines, MHC-I binding. Read-only.
