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Bioregistry

by io.github.pipeworx-io
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Bioregistry — meta-registry of biomedical identifier prefixes

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Status
Unhealthy
Uptime
46.8% over 38 days
Last Tested
Transport
Streamable HTTP
URL
Repository
pipeworx-io/mcp-bioregistry
GitHub Stars
0
Server Listing
mcp-bioregistry

TDQS

A3.6/5.0

Scored across 40 tools

Disambiguation2/5

Several tools have overlapping or easily confused purposes: ask_pipeworx, ask_pipeworx_beta, and ask_pipeworx_grounded are near-identical variants, and the polymarket_* family plus bet_research and resolution_* tools heavily overlap in scope. resolve vs resolve_entity and prefix vs prefixes also create boundary confusion. Detailed descriptions help, but the set as a whole has unclear tool boundaries.

Naming Consistency2/5

Naming is a mix of bare verbs/nouns (prefix, resolve, search, remember), verb_noun constructions (compare_entities, validate_claim), noun phrases (polymarket_arbitrage, resolution_audit), and platform variants (ask_pipeworx_beta, ask_pipeworx_grounded). No predictable convention holds across the set.

Tool Count2/5

40 tools is too many and badly misaligned with the server name: only a handful (prefix, prefixes, search, resolve) belong to Bioregistry, while the rest span Pipeworx querying, prediction markets, memory, subscriptions, and AI visibility. The count is not justified by a coherent purpose.

Completeness2/5

There is no coherent domain to assess completeness against. The Bioregistry portion is a minimal read/resolution surface, while the Pipeworx and prediction-market portions include many analysis tools but lack obvious lifecycle operations like trade execution or source management. The surface is sprawling yet incomplete for any single purpose.

Tool Schema Changelog

Recent tool additions, removals, and schema changes observed during successful MCP inspections.

  1. 6 tool updates
    • Addedcompany_facts
    • Addedkalshi_weather_edge
    • Addedrelease_calendar_markets
    • Addedresolution_audit
    • Addedresolution_diff
    • Changedsearch2 fields changed
      • changedOutput schema / properties / results / items / properties / description / type
        Previous value: -"string"New value: +[
+  "string",
+  "null"
+]
      • changedOutput schema / properties / results / items / properties / name / type
        Previous value: -"string"New value: +[
+  "string",
+  "null"
+]
  2. 1 tool update
    • Changedbet_research2 fields changed
      • changedInput schema / examples
        Previous value: -[
-  {
-    "market": "when-will-bitcoin-hit-150k"
-  },
-  {
-    "market": "https://polymarket.com/event/when-will-bitcoin-hit-150k"
-  }
-]New value: +[
+  {
+    "market": "will-kristi-noem-win-the-2028-republican-presidential-nomination"
+  },
+  {
+    "market": "https://polymarket.com/event/will-kristi-noem-win-the-2028-republican-presidential-nomination"
+  }
+]
      • changedInput schema / properties / market / description
        Previous value: -"Polymarket slug (\"when-will-bitcoin-hit-150k\"), full URL (\"https://polymarket.com/event/...\"), or question text (\"Will Bitcoin hit $150k?\"). Dated slugs stop resolving once they settle — Polymarket de-indexes resolved markets — so prefer an undated one."New value: +"Polymarket slug (\"will-kristi-noem-win-the-2028-republican-presidential-nomination\"), full URL (\"https://polymarket.com/event/...\"), or question text (\"Will Bitcoin hit $150k?\"). Dated slugs stop resolving once they settle — Polymarket de-indexes resolved markets — so prefer an undated one."
  3. 2 tool updates
    • Changedbet_research2 fields changed
      • changedInput schema / examples
        Previous value: -[
-  {
-    "market": "will-bitcoin-reach-100k-in-july-2026"
-  },
-  {
-    "market": "https://polymarket.com/event/will-bitcoin-hit-150k-by-june-30-2026"
-  }
-]New value: +[
+  {
+    "market": "when-will-bitcoin-hit-150k"
+  },
+  {
+    "market": "https://polymarket.com/event/when-will-bitcoin-hit-150k"
+  }
+]
      • changedInput schema / properties / market / description
        Previous value: -"Polymarket slug (\"will-bitcoin-hit-150k-by-june-30-2026\"), full URL (\"https://polymarket.com/event/...\"), or question text (\"Will Bitcoin hit $150k by June 30?\")"New value: +"Polymarket slug (\"when-will-bitcoin-hit-150k\"), full URL (\"https://polymarket.com/event/...\"), or question text (\"Will Bitcoin hit $150k?\"). Dated slugs stop resolving once they settle — Polymarket de-indexes resolved markets — so prefer an undated one."
    • Changedpolymarket_kalshi_spread2 fields changed
      • changedInput schema / examples
        Previous value: -[
-  {
-    "topic": "fed"
-  },
-  {
-    "topic": "btc"
-  }
-]New value: +[
+  {
+    "topic": "fed"
+  },
+  {
+    "topic": "btc"
+  },
+  {
+    "topic": "bitcoin"
+  },
+  {
+    "topic": "fed rate decision"
+  }
+]
      • changedInput schema / properties / topic / description
        Previous value: -"Pre-mapped: fed | btc | cpi | gdp | sp500 | recession | next_pope | next_uk_pm | next_israel_pm | 2028_president"New value: +"Subject to compare. Canonical keys: fed | btc | eth | cpi | gdp | sp500 | recession | next_pope | next_uk_pm | next_israel_pm | 2028_president — but aliases and keywords resolve too (\"bitcoin\", \"fed rate decision\", \"ethereum\", \"inflation\", \"s&p 500\", \"us recession\", \"next pope\", \"2028 election\"). Check resolution.topic_matched_by in the response: \"exact\"/\"alias\" is a curated pairing, \"phrase\"/\"token\" is a keyword guess."

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