sasa
Calculate solvent-accessible surface area (SASA) of a selection in square angstroms, accounting for binding-partner occlusion. Use separate object or interface_report for unbound values.
Instructions
Measures solvent-accessible surface area, in square Angstrom.
Reports the SASA of selection in the context of the object it belongs
to — so a chain measured inside a complex is already partly occluded by
its partner. To get the free (unbound) area, copy the chain to its own
object first with create, or use interface_report, which does the
bound/free bookkeeping for you.
Accuracy depends on PyMOL's dot_solvent (0 = molecular surface,
1 = solvent-accessible) and dot_density settings.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| state | No | Object state to measure. "1" is the first/only state. | 1 |
| selection | No | What to measure (e.g. "1brs and chain A"). | all |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |