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orient

Align the molecular view to the principal axes of a selected atom set, improving analysis by reorienting the camera to standard axes.

Instructions

Orients the view to align with principal axes of the selection

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
selectionNoall

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must fully disclose behavior. It only mentions the effect on the view without noting whether it is destructive, reversible, or affects other states. Lacks transparency on side effects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single concise sentence (10 words) that is front-loaded and avoids fluff. Could be slightly more informative without becoming verbose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (1 optional parameter, output schema exists), the description is adequate but lacks usage guidelines and behavioral context. It enables invocation but may not ensure correct selection among siblings.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has zero coverage (no parameter descriptions). The description adds meaning by linking 'selection' to the concept of principal axes, but does not explain default or null behavior. Partially compensates for schema deficit.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action: 'Orients the view to align with principal axes of the selection.' It uses a specific verb (orients) and resource (view) with a reference to selection. However, it does not differentiate from sibling tool 'align' which could be confused.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool over alternatives like 'center', 'reset', or 'align'. No context on prerequisites or exclusions is given.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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