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isosurface

Generate a solid isosurface from a loaded map at a specified contour level, optionally restricted to a selection, to visualize density distributions in molecular structures.

Instructions

Creates a solid isosurface

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
nameYesName for the surface object.
levelYesContour level in sigma.
selectionNoRestrict the surface to the region around this selection.all
map_objectYesName of a loaded map.

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It states only that it creates an object, but does not disclose whether it modifies existing objects, what happens on naming conflicts, or any computational requirements.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness3/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence, which is concise but omits necessary context. It is not as egregiously under-specified as 'Process', but still minimal.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple creation tool with an output schema and fully described parameters, the description is minimally sufficient but would benefit from stating that a loaded map and level are required, as well as how it differs from isomesh.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema provides comprehensive descriptions for all four parameters, so the description adds no additional semantic context. Baseline 3 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a clear verb 'Creates' and specific resource 'solid isosurface', distinguishing it from the sibling 'isomesh' which likely creates a mesh. However, it does not explicitly mention the relationship to map data or contour levels, leaving some ambiguity.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance provided on when to use isosurface vs alternatives like isomesh, nor any prerequisites such as requiring a loaded map. This is a gap.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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