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select

Create or replace a named selection in PyMOL to store and reuse molecular subsets later.

Instructions

Creates (or replaces) a named selection for later reuse.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
nameYesIdentifier you'll refer to later (e.g. ``active_site``).
selectionYesPyMOL selection expression to assign to that name.

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the burden of disclosing behavior. It does state the 'or replaces' aspect, indicating a potential destructive overwrite, and implies persistence. However, it omits other traits like error conditions or return behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, front-loaded sentence with zero filler. It efficiently communicates the core operation without unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simple two-parameter schema and the existence of an output schema, the description sufficiently covers the tool's purpose. It could provide more context about when to use it, but for a basic selection assignment, it is adequately complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with clear descriptions for both 'name' and 'selection'. The tool description adds no additional parameter meaning, so the schema is doing the heavy lifting, resulting in the baseline score of 3.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Creates (or replaces)') and names the resource ('a named selection') with a clear purpose ('for later reuse'). It distinguishes itself from siblings like 'create' or 'extract' by focusing on selections.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives. There is no mention of scenarios, prerequisites, or exclusions, leaving the agent without context for choosing this over similar selection-related operations.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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