Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
With no annotations provided, the description carries full responsibility for behavioral disclosure. It only states that RMSD is calculated, but does not mention whether the tool modifies the object, requires specific state setup, or produces an output in a particular format. The existence of an output schema reduces the need to describe return values, but other behavioral aspects remain undisclosed.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.