Unofficial PubChem MCP Server

MIT License

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compare_activity_profiles

Analyze and compare bioactivity profiles of multiple PubChem compounds to identify similarities or differences in their molecular interactions. Supports up to 50 compounds and optional activity type filtering.

Instructions

Compare bioactivity profiles across multiple compounds

Input Schema

Name	Required	Description	Default
`activity_type`	No	Specific activity type for comparison (optional)
`cids`	Yes	Array of PubChem CIDs (2-50)

Input Schema (JSON Schema)

{
  "properties": {
    "activity_type": {
      "description": "Specific activity type for comparison (optional)",
      "type": "string"
    },
    "cids": {
      "description": "Array of PubChem CIDs (2-50)",
      "items": {
        "type": "number"
      },
      "maxItems": 50,
      "minItems": 2,
      "type": "array"
    }
  },
  "required": [
    "cids"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

Related Tools

compare_activity_profiles
@Augmented-Nature/PubChem-MCP-Server
get_compound_bioactivities
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get_compound_bioactivities
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server
compare_activities
@Augmented-Nature/ChEMBL-MCP-Server
search_by_target
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get_pharmacophore_features
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