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Augmented-Nature

Unofficial PubChem MCP Server

get_assay_info

Retrieve detailed bioassay data from PubChem using the Assay ID to access experimental protocols, results, and chemical activity information.

Instructions

Get detailed information for a specific bioassay by AID

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
aidYesPubChem Assay ID (AID)

Implementation Reference

  • The handler function that implements the core logic of the 'get_assay_info' tool. It makes an API call to PubChem's assay endpoint using the provided AID and returns the formatted JSON response or throws an error.
    private async handleGetAssayInfo(args: any) { try { const response = await this.apiClient.get(`/assay/aid/${args.aid}/JSON`); return { content: [ { type: 'text', text: JSON.stringify(response.data, null, 2), }, ], }; } catch (error) { throw new McpError( ErrorCode.InternalError, `Failed to get assay info: ${error instanceof Error ? error.message : 'Unknown error'}` ); } }
  • The input schema definition for the 'get_assay_info' tool, specifying that it requires a numeric 'aid' parameter (PubChem Assay ID).
    inputSchema: { type: 'object', properties: { aid: { type: 'number', description: 'PubChem Assay ID (AID)' }, }, required: ['aid'], },
  • src/index.ts:589-599 (registration)
    The tool registration entry in the MCP tools list, defining the name, description, and input schema for 'get_assay_info'.
    { name: 'get_assay_info', description: 'Get detailed information for a specific bioassay by AID', inputSchema: { type: 'object', properties: { aid: { type: 'number', description: 'PubChem Assay ID (AID)' }, }, required: ['aid'], }, },
  • src/index.ts:782-783 (registration)
    The switch case in the request handler that dispatches calls to 'get_assay_info' to the appropriate handler method.
    case 'get_assay_info': return await this.handleGetAssayInfo(args);

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