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Augmented-Nature

Unofficial PubChem MCP Server

predict_admet_properties

Predict ADMET properties (Absorption, Distribution, Metabolism, Excretion, Toxicity) using a PubChem CID or SMILES string for informed chemical compound analysis and drug development.

Instructions

Predict ADMET properties (Absorption, Distribution, Metabolism, Excretion, Toxicity)

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
cidNoPubChem Compound ID (CID)
smilesNoSMILES string (alternative to CID)

Implementation Reference

  • src/index.ts:527-538 (registration)
    Registration of the 'predict_admet_properties' tool in the tools array passed to server.setTools(), including name, description, and input schema.
    { name: 'predict_admet_properties', description: 'Predict ADMET properties (Absorption, Distribution, Metabolism, Excretion, Toxicity)', inputSchema: { type: 'object', properties: { cid: { type: ['number', 'string'], description: 'PubChem Compound ID (CID)' }, smiles: { type: 'string', description: 'SMILES string (alternative to CID)' }, }, required: [], }, },
  • src/index.ts:770-771 (registration)
    Switch case in the request handler that dispatches calls to 'predict_admet_properties' to the specific handler method.
    case 'predict_admet_properties': return await this.handlePredictAdmetProperties(args);
  • The handler function for executing the 'predict_admet_properties' tool. Currently a placeholder that returns a message indicating it is not yet implemented.
    private async handlePredictAdmetProperties(args: any) { return { content: [{ type: 'text', text: JSON.stringify({ message: 'ADMET prediction not yet implemented', args }, null, 2) }] }; }

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