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Augmented-Nature

Unofficial PubChem MCP Server

get_compound_synonyms

Retrieve all names and synonyms for a specific compound using its PubChem CID. This tool helps streamline chemical identification and data lookup within the Unofficial PubChem MCP Server.

Instructions

Get all names and synonyms for a compound

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
cidYesPubChem Compound ID (CID)

Implementation Reference

  • The core handler function for the "get_compound_synonyms" tool. Validates input using isValidCidArgs, calls PubChem API to retrieve synonyms for the given CID, and returns the response as JSON-formatted text.
    private async handleGetCompoundSynonyms(args: any) { if (!isValidCidArgs(args)) { throw new McpError(ErrorCode.InvalidParams, 'Invalid CID arguments'); } try { const response = await this.apiClient.get(`/compound/cid/${args.cid}/synonyms/JSON`); return { content: [ { type: 'text', text: JSON.stringify(response.data, null, 2), }, ], }; } catch (error) { throw new McpError( ErrorCode.InternalError, `Failed to get compound synonyms: ${error instanceof Error ? error.message : 'Unknown error'}` ); } }
  • The tool definition including name, description, and input schema requiring a 'cid' parameter (number or string). This is used in server.setTools() for registration.
    { name: 'get_compound_synonyms', description: 'Get all names and synonyms for a compound', inputSchema: { type: 'object', properties: { cid: { type: ['number', 'string'], description: 'PubChem Compound ID (CID)' }, }, required: ['cid'], }, },
  • src/index.ts:750-751 (registration)
    Switch case in the tool request handler that dispatches "get_compound_synonyms" calls to the specific handler function.
    case 'get_compound_synonyms': return await this.handleGetCompoundSynonyms(args);
  • Type guard helper function for validating CID arguments, used in the handler and other tools.
    const isValidCidArgs = ( args: any ): args is { cid: number | string; format?: string } => { return ( typeof args === 'object' && args !== null && (typeof args.cid === 'number' || typeof args.cid === 'string') && (args.format === undefined || ['json', 'sdf', 'xml', 'asnt', 'asnb'].includes(args.format)) ); };

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