Unofficial PubChem MCP Server

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get_pharmacophore_features

Identify pharmacophore features and binding site details for a compound using its PubChem CID to support drug design and molecular interaction analysis.

Instructions

Get pharmacophore features and binding site information

Input Schema

Name	Required	Description	Default
`cid`	Yes	PubChem Compound ID (CID)

Input Schema (JSON Schema)

{
  "properties": {
    "cid": {
      "description": "PubChem Compound ID (CID)",
      "type": [
        "number",
        "string"
      ]
    }
  },
  "required": [
    "cid"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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@Augmented-Nature/PubChem-MCP-Server
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