PubChem MCP Server

MIT License

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compare_activity_profiles

Analyze and compare bioactivity profiles of 2-50 compounds using PubChem CIDs to identify similarities or differences in their biological effects.

Instructions

Compare bioactivity profiles across multiple compounds

Input Schema

Name	Required	Description	Default
`activity_type`	No	Specific activity type for comparison (optional)
`cids`	Yes	Array of PubChem CIDs (2-50)

Input Schema (JSON Schema)

{
  "properties": {
    "activity_type": {
      "description": "Specific activity type for comparison (optional)",
      "type": "string"
    },
    "cids": {
      "description": "Array of PubChem CIDs (2-50)",
      "items": {
        "type": "number"
      },
      "maxItems": 50,
      "minItems": 2,
      "type": "array"
    }
  },
  "required": [
    "cids"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

Related Tools

compare_activity_profiles
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server
get_compound_bioactivities
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server
get_compound_bioactivities
@Augmented-Nature/PubChem-MCP-Server
get_compound_info
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server
batch_compound_lookup
@Augmented-Nature/PubChem-MCP-Server
get_pharmacophore_features
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