PubChem MCP Server

MIT License

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batch_compound_lookup

Process up to 200 compound IDs in bulk to retrieve properties, synonyms, classifications, or descriptions from the PubChem database.

Instructions

Process multiple compound IDs efficiently

Input Schema

Name	Required	Description	Default
`cids`	Yes	Array of PubChem CIDs (1-200)
`operation`	No	Operation to perform (default: property)

Input Schema (JSON Schema)

{
  "properties": {
    "cids": {
      "description": "Array of PubChem CIDs (1-200)",
      "items": {
        "type": "number"
      },
      "maxItems": 200,
      "minItems": 1,
      "type": "array"
    },
    "operation": {
      "description": "Operation to perform (default: property)",
      "enum": [
        "property",
        "synonyms",
        "classification",
        "description"
      ],
      "type": "string"
    }
  },
  "required": [
    "cids"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

Related Tools

analyze_molecular_complexity
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server
get_compound_synonyms
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get_compound_info
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server
get_literature_references
@Augmented-Nature/PubChem-MCP-Server
search_patents
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search_compounds
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server

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