PubChem MCP Server

MIT License

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get_compound_properties

Retrieve molecular properties like MW, logP, and TPSA for chemical compounds using the PubChem CID. Specify desired properties for precise data extraction.

Instructions

Get molecular properties (MW, logP, TPSA, etc.)

Input Schema

Name	Required	Description	Default
`cid`	Yes	PubChem Compound ID (CID)
`properties`	No	Specific properties to retrieve (optional)

Input Schema (JSON Schema)

{
  "properties": {
    "cid": {
      "description": "PubChem Compound ID (CID)",
      "type": [
        "number",
        "string"
      ]
    },
    "properties": {
      "description": "Specific properties to retrieve (optional)",
      "items": {
        "type": "string"
      },
      "type": "array"
    }
  },
  "required": [
    "cid"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

Related Tools

get_compound_properties
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server
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calculate_descriptors
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calculate_descriptors
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get_3d_conformers
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