PubChem MCP Server

MIT License

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search_by_target

Identify chemical compounds tested against a specific biological target, such as a gene, protein, or pathway, by specifying the target and activity type within PubChem MCP Server.

Instructions

Find compounds tested against a specific biological target

Input Schema

Name	Required	Description
`activity_type`	No	Type of activity (e.g., IC50, EC50, Ki)
`max_records`	No	Maximum number of results (1-1000, default: 100)
`target`	Yes	Target name (gene, protein, or pathway)

Input Schema (JSON Schema)

{
  "properties": {
    "activity_type": {
      "description": "Type of activity (e.g., IC50, EC50, Ki)",
      "type": "string"
    },
    "max_records": {
      "description": "Maximum number of results (1-1000, default: 100)",
      "maximum": 1000,
      "minimum": 1,
      "type": "number"
    },
    "target": {
      "description": "Target name (gene, protein, or pathway)",
      "type": "string"
    }
  },
  "required": [
    "target"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

Related Tools

search_compounds
@Augmented-Nature/PubChem-MCP-Server
search_targets
@Augmented-Nature/ChEMBL-MCP-Server
search_by_target
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server
search_bioassays
@Augmented-Nature/PubChem-MCP-Server
search_by_cas_number
@Augmented-Nature/PubChem-MCP-Server
search_bioassays
@Augmented-Nature/Augmented-Nature-PubChem-MCP-Server

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