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search_kegg_pathway

Search KEGG for metabolic and signaling pathways using a pathway name or gene symbol. Specify organism code for species-specific results.

Instructions

Search KEGG for metabolic and signaling pathways by name or gene.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
queryYesPathway name or gene symbol
organismNoOrganism code (default: 'hsa' for human)hsa
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided; description only states 'Search KEGG' without disclosing behavioral traits like read-only nature, rate limits, or authentication requirements.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Single sentence, directly states action and scope. Front-loaded with verb 'Search'. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Adequately describes core functionality for a simple search tool with 2 parameters. Lacks details on return format, pagination, or any limitations given no output schema.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Input schema has 100% coverage with clear descriptions for both parameters. Description adds context about pathway types ('metabolic and signaling') but doesn't add significant meaning beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states it searches KEGG for metabolic and signaling pathways using a name or gene query. Distinguishes from sibling get_kegg_pathway which retrieves a specific pathway.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Implied usage for searching pathways by name or gene, but no explicit guidance on when to use this vs. sibling get_kegg_pathway or other search tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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