submit_pipeline_job
Submit a pipeline job to AWS Batch for a bioinformatics project by specifying project ID, action, platform, and workflow type. Optionally set export reference and auto-release flag.
Instructions
Submit a pipeline job to AWS Batch for a project.
Args: project_id: The project identifier action: Pipeline action (create-project or export-project-results) platform: Platform name (Arvados or SevenBridges) project_type: Pipeline workflow type (e.g., RNA-Seq, WGS) reference: Export reference (required for export action) auto_release: Auto-release flag for export action
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| action | Yes | ||
| platform | Yes | ||
| reference | No | ||
| project_id | Yes | ||
| auto_release | No | ||
| project_type | Yes |