NGS360 MCP Server
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TDQS
Scored across 82 tools
Many tools are distinct by entity and action (e.g., create_project vs create_run), but there is overlap between search variants (search, search_projects, search_runs, etc.) and submit job variants (submit_job, submit_demux_job, submit_pipeline_job). Some tools like get_run_metrics and get_samples_for_run could be confused with run-related queries. Overall, most tools are distinguishable but with some ambiguity.
Tool names consistently use verb_noun snake_case (e.g., add_sample_to_project, create_workflow_version). WES tools have a clear wes_ prefix. Minor inconsistencies exist, such as 'clear_samples_for_run' vs 'remove_sample_from_run' and 'update_run_status' vs 'update_job', but these are still clear. No mixing of conventions.
82 tools is excessive for most domains, suggesting overly fine-grained operations and redundancy. For example, there are 5 search tools, 5 job submission tools, and many CRUD tools for each entity. This likely overwhelms agents and indicates poor scoping. A well-scoped server would have 15-25 tools.
The server covers a broad range of NGS entities (projects, samples, runs, workflows, pipelines, QC, files, vendors, WES). However, some entities lack full CRUD (e.g., no delete_pipeline, delete_workflow, update_sample). The search and job submission areas are overcovered, while others like sample updates are missing. Notable gaps exist.