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NGS360

NGS360 MCP Server

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by NGS360

list_files

List or search files in NGS360 by URI, entity type, or ID, with options to include archived files and paginate results.

Instructions

List or search files.

Args: uri: Filter by URI (returns latest version) entity_type: Filter by entity type (PROJECT, SEQUENCING_RUN, SAMPLE, QCRECORD, PIPELINE) entity_id: Filter by entity ID (requires entity_type) include_archived: Include archived files page: Page number per_page: Items per page

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
uriNo
pageNo
per_pageNo
entity_idNo
entity_typeNo
include_archivedNo
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations exist, and the description fails to disclose behavioral traits such as read-only nature, authentication requirements, rate limits, or pagination behavior beyond parameter hints.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Bullet list format with clear parameter explanations is concise and front-loaded; every sentence adds necessary information without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no output schema and no annotations, the description covers essential filtering and pagination, but lacks details on return format or safety profile, which are minor gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description compensates fully by explaining each parameter's purpose and acceptable values (e.g., entity_type enum), adding significant value.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states 'List or search files' and enumerates filtering parameters, making the tool's purpose unambiguous and distinct from sibling tools like get_file.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description implies use for listing/searching files but does not explicitly differentiate from alternatives like get_file or the general search tool, nor provides when-not-to-use guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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