string_interactions
Fetch protein-protein interaction partners from STRING-DB for plant species. Input a UniProt accession or locus identifier to retrieve first-neighbor interactions with combined and sub-scores.
Instructions
Fetch protein-protein interaction partners from STRING-DB (string-db.org). Accepts either a UniProt accession or a locus identifier — the latter is resolved via UniProt first. Defaults to arabidopsis_thaliana; pass organism= for other plant species (slug, scientific/common name, or NCBI taxid). Returns first-neighbor partners with the combined STRING score plus per-channel sub-scores (experimental, database, textmining, predicted).
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| locus_or_accession | Yes | UniProt accession (Q0WV96) or locus (AT1G01010) | |
| limit | No | Number of partners to return | |
| organism | No | Plant organism — accepts canonical slug (arabidopsis_thaliana), scientific or common name, or NCBI taxid | arabidopsis_thaliana |
Output Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | The locus or accession the user passed | |
| accession | Yes | UniProt accession actually queried at STRING | |
| organism | Yes | Plant organism canonical slug, e.g. arabidopsis_thaliana | |
| partners | Yes |