biological_context_synth
Resolve a plant gene locus to retrieve functional annotations, homologs, pathways, protein interactions, co-expression partners, and a consensus ranking of interacting partners across multiple databases.
Instructions
Synthesis: one-call equivalent of the biological_context prompt. Resolves UniProt accession, then fans out to Gramene homologs, KEGG pathways, STRING-DB partners, and ATTED-II coexpression in parallel. Adds a consensus_partners ranking that merges STRING + ATTED scores.
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| locus | Yes | ||
| organism | No | Plant organism — accepts canonical slug (arabidopsis_thaliana), scientific or common name, or NCBI taxid | arabidopsis_thaliana |
| top_n | No |
Output Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| tool | Yes | Synthesis tool name, e.g. analyze_locus_synth | |
| input | Yes | Echoed input arguments | |
| started_at | Yes | ISO 8601 UTC timestamp | |
| elapsed_s | Yes | Total orchestrator wall time | |
| steps | Yes | Per-backend execution rows | |
| result | No | Composed cross-source result; None if root step failed |