Gramene Homologs
gramene_homologsRead-onlyIdempotent
Retrieve orthologs and paralogs for a plant locus using Gramene compara. Filter by homology type: ortholog, paralog, or all. Returns target locus with homology category and gene tree ID.
Instructions
Fetch orthologs and paralogs for a plant locus from Gramene compara (data.gramene.org v69). Default homology_type='ortholog'; pass 'paralog' for in-species duplicates or 'all' for everything. Returns target_locus + homology category (type) + shared gene_tree_id per hit. The fl=homology projection does not carry per-row taxon, identity, or protein ID; pair with resolve_locus_to_uniprot for protein-level enrichment and with blast_sequence for sequence similarity discovery.
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| limit | No | Max homolog rows to return. 'total' always reports the true pre-cap count and 'truncated' says whether the cap bit. | |
| locus | Yes | e.g. AT1G01010 (Arabidopsis), Os01g0100100 (rice) | |
| homology_type | No | Filter on homology kind | ortholog |
Output Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| locus | Yes | ||
| total | Yes | Number of homologs after filtering, BEFORE the row cap | |
| release | Yes | Gramene release identifier, e.g. v69 | |
| homologs | Yes | ||
| truncated | No | True when the row list was capped (< total); pass limit= to change the cap |