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musharna

plant-genomics-mcp

batch_gramene_homologs

Retrieve homologs for up to 50 plant gene loci in a single batch query, filtering by ortholog, paralog, or all types.

Instructions

Batch version of gramene_homologs. Up to 50 loci per call; shares the homology_type filter across all loci. Returns the standard batch envelope (count + results dict + errors dict).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
lociYesList of locus identifiers (max 50)
homology_typeNoortholog

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
toolYesThe batch tool name, e.g. batch_resolve_locus_to_uniprot
countYesNumber of loci in the input list
resultsYeslocus → per-locus result dict (same shape as the single-locus tool)
errorsYeslocus → '[ClassName] message' for PlantGenomicsError failures
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided. The description discloses the return structure (count, results, errors) and the shared filter behavior, but does not mention safety, auth, or rate limits. For a read-like operation, this is adequate but not thorough.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, each serving a clear purpose: first states the tool's role and limit, second details output and shared filter. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists, the description covers key aspects: purpose, batch limits, filter sharing, and output envelope. It lacks prerequisites or error handling, but for a retrieval tool this is sufficient.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 50%; the description adds that homology_type applies to all loci, which is not in the schema. But it does not elaborate on parameter formats beyond the schema's enum and max items.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it's a batch version of gramene_homologs, handles up to 50 loci, and applies a homology_type filter. It distinguishes itself from the single-query sibling tool.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Specifies the batch size limit and that the homology_type filter is shared across loci, implying use for multiple loci. However, it does not explicitly state when not to use it or name alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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