bar_aiv_interactions
Retrieve Arabidopsis gene regulatory network references or rice protein interaction predictions for a given locus. Input an AGI or MSU locus to get curated literature or co-expression-based partners.
Instructions
Fetch BAR AIV (Arabidopsis Interactions Viewer) interactions for an Arabidopsis or rice locus. Dispatches by organism: Arabidopsis returns curated GRN paper refs from /interactions/get_paper_by_agi/{locus} (PubMed ID, title, image, comments, pipe-split tags); rice returns predicted PPI partners from /interactions/rice/{locus} with Pearson co-expression r (pcc), evidence hits, and quality score. The kind field discriminates the response shape (grn_papers vs ppi_predictions). Rice requires the MSU LOC_Os* locus format — RAP-DB Osg is rejected upstream. Only Arabidopsis and rice are supported by AIV; other organisms raise OrganismNotSupported.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| locus | Yes | AGI locus (AT1G01010) for Arabidopsis or MSU locus (LOC_Os01g01080) for rice | |
| organism | No | arabidopsis_thaliana or oryza_sativa — slug, scientific/common name, or NCBI taxid | arabidopsis_thaliana |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| locus | Yes | ||
| organism | Yes | ||
| kind | Yes | Discriminator: grn_papers (Arabidopsis) or ppi_predictions (rice) | |
| count | Yes | Total rows returned (len of papers or partners) | |
| papers | No | GRN paper refs (populated when kind=grn_papers) | |
| partners | No | PPI predictions (populated when kind=ppi_predictions) | |
| source_url | Yes | BAR AIV endpoint URL for traceability |