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musharna

plant-genomics-mcp

batch_string_interactions

Retrieve protein-protein interactions for multiple plant loci or accessions in a single batch call.

Instructions

Batch version of string_interactions. Up to 50 inputs per call.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
loci_or_accessionsYes
limitNo
organismNoPlant organism — accepts canonical slug (arabidopsis_thaliana), scientific or common name, or NCBI taxidarabidopsis_thaliana

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
toolYesThe batch tool name, e.g. batch_resolve_locus_to_uniprot
countYesNumber of loci in the input list
resultsYeslocus → per-locus result dict (same shape as the single-locus tool)
errorsYeslocus → '[ClassName] message' for PlantGenomicsError failures
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden of behavioral disclosure. It only mentions the input limit (50) but fails to describe what the tool returns, side effects, authorization needs, or any other behavioral traits. The presence of an output schema is not acknowledged.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise—one short sentence that front-loads the key information (batch version, input limit). Every word earns its place; no wasted text.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has an output schema, the description should at least mention what the tool returns or its purpose beyond input handling. It only covers the batch aspect and input limit, ignoring output and other behavioral details. For a batch wrapper tool, this is insufficiently complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds no meaning to any of the three parameters. Schema description coverage is only 33% (only 'organism' has a description), and the tool description does not compensate by explaining 'loci_or_accessions' or 'limit'. This leaves the agent to infer parameter purposes from names alone.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly identifies it as a batch version of 'string_interactions' and specifies the input limit (50), distinguishing it from the single-input sibling tool. However, it does not explicitly state what 'string_interactions' does, relying on the sibling name for context.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage when multiple inputs are needed ('batch version') but provides no explicit guidance on when not to use it or specific alternatives beyond the sibling name. The context suggests using this tool over the non-batch version for bulk queries.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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