Batch: Gene Cross-References
batch_get_gene_xrefsRetrieve cross-references (xrefs) for up to 50 plant gene loci at once from Ensembl Plants. Each locus returns its xref count, list, and rollup by database.
Instructions
Batch variant of get_gene_xrefs. Fans out per-locus xref lookups over Ensembl Plants in parallel (up to 50 loci). Each results[locus] is the full single-locus shape (count + xrefs[] + by_db rollup).
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| loci | Yes | List of locus identifiers (1–50). Successes land in results[locus]; PlantGenomicsError failures in errors[locus]. | |
| organism | No | Plant organism — accepts canonical slug (arabidopsis_thaliana), scientific or common name, or NCBI taxid | arabidopsis_thaliana |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| tool | Yes | The batch tool name, e.g. batch_resolve_locus_to_uniprot | |
| count | Yes | Number of distinct loci queried, returned (== len(results) + len(errors)). The input list is de-duplicated first, so this is LOWER than the number of loci you sent if you sent a duplicate — that is de-duplication, not a dropped locus. | |
| errors | Yes | locus → '[ClassName] message' for PlantGenomicsError failures | |
| results | Yes | locus → per-locus result dict (same shape as the single-locus tool) |