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plant-public-mcp

植物生物信息学 公共接口 MCP:UniProt / NCBI / InterProScan / PDB / AlphaFold, 以及 Ensembl Plants、Sol Genomics(茄科公共入口)、拟南芥 BAR / ATTED / STRING。

本包不包含任何本地基因组、本地 RNA-seq 或物种专库数据。数据全部走公开 API; 无开放 API 的工具只返回提交步骤与参数建议,不编造结果。

覆盖资源

模块

数据源

访问

uniprot

UniProt

REST

ncbi

NCBI E-utilities

REST(可选 NCBI_API_KEY)

interpro

EBI InterProScan

REST 异步作业

structure

RCSB PDB + AlphaFold DB

REST

plant

Ensembl Plants

REST

plant

Sol Genomics、SignalP、TMHMM、PlantCARE、PlantTFDB、TAIR、scPlantDB

网页调度指引

bar / atted / stringdb

拟南芥 BAR eFP、ATTED-II、STRING

REST

茄科:用 ensembl_plants_gene(species="solanum_lycopersicum", ...) 或 `plant_resource_guide("solgenomics")。

Related MCP server: BioContextAI Knowledgebase MCP

运行

cd plant-public-mcp
uv sync
uv run server.py

Cursor / Claude / MiniMax 注册:

{
  "mcpServers": {
    "plant-public": {
      "command": "uv",
      "args": ["run", "--directory", "/absolute/path/to/plant-public-mcp", "server.py"]
    }
  }
}

CLI:uv run plant-cli uniprot summary P0DP23

许可

MIT。上游数据库各有自己的使用条款,调用时请遵守速率限制与署名要求。

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