plant-public-mcp
plant-public-mcp
植物生物信息学 公共接口 MCP:UniProt / NCBI / InterProScan / PDB / AlphaFold, 以及 Ensembl Plants、Sol Genomics(茄科公共入口)、拟南芥 BAR / ATTED / STRING。
本包不包含任何本地基因组、本地 RNA-seq 或物种专库数据。数据全部走公开 API; 无开放 API 的工具只返回提交步骤与参数建议,不编造结果。
覆盖资源
模块 | 数据源 | 访问 |
| UniProt | REST |
| NCBI E-utilities | REST(可选 |
| EBI InterProScan | REST 异步作业 |
| RCSB PDB + AlphaFold DB | REST |
| Ensembl Plants | REST |
| Sol Genomics、SignalP、TMHMM、PlantCARE、PlantTFDB、TAIR、scPlantDB | 网页调度指引 |
| 拟南芥 BAR eFP、ATTED-II、STRING | REST |
茄科:用 ensembl_plants_gene(species="solanum_lycopersicum", ...) 或
`plant_resource_guide("solgenomics")。
Related MCP server: BioContextAI Knowledgebase MCP
运行
cd plant-public-mcp
uv sync
uv run server.pyCursor / Claude / MiniMax 注册:
{
"mcpServers": {
"plant-public": {
"command": "uv",
"args": ["run", "--directory", "/absolute/path/to/plant-public-mcp", "server.py"]
}
}
}CLI:uv run plant-cli uniprot summary P0DP23
许可
MIT。上游数据库各有自己的使用条款,调用时请遵守速率限制与署名要求。
This server cannot be deployed
Maintenance
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