plant-public-mcp

Plant bioinformatics public interface MCP: UniProt / NCBI / InterProScan / PDB / AlphaFold, plus Ensembl Plants, Sol Genomics (Solanaceae public portal), and Arabidopsis BAR / ATTED / STRING.

This package does not include any local genomes, local RNA-seq, or species-specific database data. All data goes through public APIs; tools without an open API only return submission steps and parameter suggestions, and do not fabricate results.

Covered Resources

For Solanaceae: use ensembl_plants_gene(species="solanum_lycopersicum", ...) or plant_resource_guide("solgenomics"). This package does not include a pepper-specific database.

Related MCP server: BioContextAI Knowledgebase MCP

Running

cd plant-public-mcp
uv sync
uv run server.py

Cursor / Claude / MiniMax registration:

{
  "mcpServers": {
    "plant-public": {
      "command": "uv",
      "args": ["run", "--directory", "/absolute/path/to/plant-public-mcp", "server.py"]
    }
  }
}

CLI: uv run plant-cli uniprot summary P0DP23

License

MIT. Upstream databases each have their own terms of use; please respect rate limits and attribution requirements when calling them.