TogoMCP

PREFIX mbgd: <http://purl.jp/bio/11/mbgd#> PREFIX orth: <http://purl.org/net/orth#> PREFIX obo: <http://purl.obolibrary.org/obo/> PREFIX dct: <http://purl.org/dc/terms/> PREFIX void: <http://rdfs.org/ns/void#> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX foaf: <http://xmlns.com/foaf/0.1/> PREFIX pav: <http://purl.org/pav/> PREFIX sio: <http://semanticscience.org/resource/> PREFIX ncbi: <http://www.ncbi.nlm.nih.gov/> PREFIX ncbiprotein: <http://www.ncbi.nlm.nih.gov/protein/> PREFIX taxid: <http://identifiers.org/taxonomy/> PREFIX up: <http://purl.uniprot.org/core/> PREFIX uniprot: <http://purl.uniprot.org/uniprot/> PREFIX uptax: <http://purl.uniprot.org/taxonomy/> PREFIX resource: <http://mbgd.genome.ad.jp/rdf/resource/> PREFIX organism: <http://mbgd.genome.ad.jp/rdf/resource/organism/> PREFIX nucseq: <http://mbgd.genome.ad.jp/rdf/resource/nucseq/> PREFIX cluster: <http://mbgd.genome.ad.jp/rdf/resource/cluster/> PREFIX domain: <http://mbgd.genome.ad.jp/rdf/resource/domain/2018-01_default/tax1129:1182/> PREFIX faldo: <http://biohackathon.org/resource/faldo#> PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> <ClusterShape> { a [ orth:OrthologsCluster ] ; dct:identifier xsd:string ; rdfs:label xsd:string ; dct:description xsd:string ; mbgd:score xsd:integer ; mbgd:dist xsd:integer ; mbgd:funcMbgd xsd:string ; mbgd:funcCog xsd:string ; mbgd:funcKegg xsd:string ; mbgd:funcTigr xsd:string ; foaf:page IRI ; void:inDataset @<DatasetShape> ; orth:hasHomologous @<DomainShape> + } <DatasetShape> { a [ void:Dataset orth:OrthologyDataset ] ; dct:title xsd:string ; dct:description xsd:string ; dct:license xsd:string ; pav:version xsd:string ; dct:created xsd:time ; dct:creator IRI ; dct:publisher IRI ; dct:source IRI ; pav:derivedFrom IRI ; void:dataDump IRI ; foaf:page IRI } <DomainShape> { a [ orth:Subgene mbgd:Domain faldo:Region ] ; mbgd:gene @<GeneShape> } <GeneShape> { a [ orth:Gene mbgd:CDS ] ; dct:identifier xsd:string ; rdfs:label xsd:string ; dct:description xsd:string ; mbgd:aaLength xsd:integer ; foaf:page IRI ; mbgd:domain IRI ; sio:SIO_000028 IRI ; mbgd:protein IRI ; mbgd:uniprot IRI ; sio:SIO_010078 IRI + ; dct:source IRI ; mbgd:nucSeq @<NucseqShape> ; mbgd:taxon IRI ; obo:RO_0002162 IRI ; mbgd:organism @<OrganismShape> } <NucseqShape> { a [ mbgd:Chromosome mbgd:Circular ] ; rdfs:label xsd:string ; dct:identifier xsd:integer ; mbgd:nucLength xsd:integer ; mbgd:geneCount xsd:integer ; rdfs:seeAlso IRI } <OrganismShape> { a [ mbgd:Genome mbgd:CompleteGenome ] ; dct:identifier xsd:string ; rdfs:label xsd:string ; mbgd:abbrev xsd:string ; mbgd:family xsd:string ; mbgd:genus xsd:string ; mbgd:species xsd:string ; mbgd:strain xsd:string ; mbgd:spid xsd:string ; obo:RO_0002162 IRI ; up:organism IRI ; mbgd:inTaxon IRI ; mbgd:inSuperkingdom IRI ; mbgd:inPhylum IRI ; mbgd:inOrder IRI ; mbgd:inFamily IRI ; mbgd:inGenus IRI ; mbgd:inSpecies IRI ; foaf:page IRI ; mbgd:assembly IRI ; dct:issued xsd:string ; mbgd:assemblyLevel xsd:string ; mbgd:assemblyTotalLength xsd:integer ; mbgd:assemblyTotalGapLength xsd:integer ; mbgd:assemblyContigCount xsd:integer ; mbgd:assemblyContigN50 xsd:integer ; mbgd:assemblyMoleculeCount xsd:integer ; mbgd:assemblyTopLevelCount xsd:integer ; mbgd:unlocalized_total_length xsd:integer ; mbgd:unlocalizedUngappedLength xsd:integer }