TogoMCP

PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX dct: <http://purl.org/dc/terms/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX schema: <https://purl.dsmz.de/schema/>
PREFIX strain: <https://purl.dsmz.de/bacdive/strain/>
PREFIX reference: <https://purl.dsmz.de/bacdive/reference/>
PREFIX cell_shape: <https://purl.dsmz.de/bacdive/cell_shape/>
PREFIX cell_size: <https://purl.dsmz.de/bacdive/cell_size/>
PREFIX culture_medium: <https://purl.dsmz.de/mediadive/culture_medium/>
PREFIX cell_motility: <https://purl.dsmz.de/bacdive/cell_motility/>
PREFIX colony_morphology: <https://purl.dsmz.de/bacdive/colony_morphology/>
PREFIX culture_collection_number: <https://purl.dsmz.de/bacdive/culture_collection_number/>
PREFIX culture_ph: <https://purl.dsmz.de/bacdive/culture_pH/>
PREFIX culture_temp: <https://purl.dsmz.de/bacdive/culture_temp/>
PREFIX enzyme: <https://purl.dsmz.de/bacdive/enzyme/>
PREFIX gc_content: <https://purl.dsmz.de/bacdive/gc_content/>
PREFIX gram_stain: <https://purl.dsmz.de/bacdive/gram_stain/>
PREFIX halophily: <https://purl.dsmz.de/bacdive/halophily/>
PREFIX isolation: <https://purl.dsmz.de/bacdive/isolation/>
PREFIX location: <https://purl.dsmz.de/bacdive/location/>
PREFIX oxygen_tolerance: <https://purl.dsmz.de/bacdive/oxygen_tolerance/>
PREFIX risk_assessment: <https://purl.dsmz.de/bacdive/risk_assessment/>
PREFIX sequence_16s: <https://purl.dsmz.de/bacdive/sequence_16S/>
PREFIX sequence_genomes: <https://purl.dsmz.de/bacdive/sequence_genomes/>
PREFIX strain_designation: <https://purl.dsmz.de/bacdive/strain_designation/>
PREFIX nutrition_type: <https://purl.dsmz.de/bacdive/nutrition_type/>
PREFIX pathogenicity: <https://purl.dsmz.de/bacdive/pathogenicity/>
PREFIX pigmentation: <https://purl.dsmz.de/bacdive/pigmentation/>
PREFIX enrichment: <https://purl.dsmz.de/bacdive/enrichment>
PREFIX spore_formation: <https://purl.dsmz.de/bacdive/spore_formation>
<StrainShape> {
  a [ schema:Strain ] ;
  dct:description xsd:string ;
  rdfs:hasScientificName xsd:string ;
  rdfs:label xsd:string ;
  schema:hasBacDiveID xsd:integer ;
  schema:hasClass xsd:string ;
  schema:hasDesignation xsd:string ;
  schema:hasDomain xsd:string ;
  schema:hasFamily xsd:string ;
  schema:hasGenus xsd:string ;
  schema:hasOrder xsd:string ;
  schema:hasPhylum xsd:string ;
  schema:hasReference @<ReferenceShape> ;
  schema:hasSpecies xsd:string ;
  schema:hasSpeciesEpithet xsd:string ;
  schema:hasStrainNames xsd:string ;
  schema:hasStrainNumber xsd:string ;
  schema:hasTaxID xsd:integer ;
  schema:hasTaxonomicRank xsd:string ;
  schema:isTypeStrain xsd:trueclass ;
  schema:matchesTaxIDLevel xsd:string
}
<CellMotilityShape> {
  a [ schema:CellMotility schema:MicrobialPhenotype schema:Phenotype ] ;
  rdfs:label xsd:falseclass ;
  schema:describesStrain @<StrainShape> ;
  schema:hasPhenotypeInformation xsd:falseclass ;
  schema:hasReference @<ReferenceShape> ;
  schema:isMotile xsd:falseclass
}
<CellShapeShape> {
  a [ schema:CellMorphology schema:CellShape schema:Phenotype ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasReference @<ReferenceShape>
}
<CellSizeShape> {
  a [ schema:CellMorphology schema:CellSize schema:MicrobialPhenotype schema:Phenotype ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasLength xsd:string ;
  schema:hasLengthRangeEnd xsd:float ;
  schema:hasLengthRangeStart xsd:float ;
  schema:hasLengthUnit xsd:string ;
  schema:hasPhenotypeInformation xsd:float ;
  schema:hasReference @<ReferenceShape> ;
  schema:hasWidth xsd:float ? ;
  schema:hasWidthRangeEnd xsd:float ? ;
  schema:hasWidthRangeStart xsd:float ? ;
  schema:hasWidthUnit xsd:string ?
}
<ColonyMorphologyShape> {
  a [ schema:ColonyMorphology schema:MicrobialPhenotype schema:Phenotype ] ;
  schema:describesStrain @<StrainShape> ;
  schema:hasColonyColor xsd:string ? ;
  schema:hasColonyLength xsd:string ? ;
  schema:hasColonyLengthRangeEnd xsd:float ? ;
  schema:hasColonyLengthRangeStart xsd:float ? ;
  schema:hasColonyMorphologyInformation xsd:string ? ;
  schema:hasGrowthInformation  ;
  schema:hasIncubationInformation xsd:string ? ;
  schema:hasIncubationPeriod xsd:string ? ;
  schema:hasIncubationPeriodRangeEnd xsd:float ? ;
  schema:hasIncubationPeriodRangeStart xsd:float ? ;
  schema:hasMediumComposition  ;
  schema:hasColonyShape xsd:string ? ;
  schema:hasReference @<ReferenceShape>
}
<CultureCollectionNumberShape> {
  a [ schema:CultureCollectionNumber schema:Identifier schema:OrganismIdentifier schema:StrainNumber ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasLink xsd:string ;
  schema:hasReference @<ReferenceShape>
}
<CultureMediumShape> {
  a [ schema:ConceptualEntity schema:CultureCondition schema:CultureMedium ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasGrowthInformation xsd:trueclass ;
  schema:hasMediaDiveID xsd:string ;
  schema:hasMediaLink IRI ;
  schema:hasMediumGrowth xsd:trueclass ;
  schema:hasReference @<ReferenceShape> ;
  schema:providedBy xsd:string
}
<CulturePHShape> {
  a [ schema:ConceptualEntity schema:CultureCondition schema:CulturePH ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasGrowthInformation xsd:string ;
  schema:hasPHRangeEnd xsd:float ;
  schema:hasPHRangeStart xsd:float ;
  schema:hasReference @<ReferenceShape> ;
  schema:hasTestAbility xsd:string ;
  schema:hasTestType xsd:string
}
<CultureTempShape> {
  a [ schema:ConceptualEntity schema:CultureCondition schema:CultureTemperature ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:growthObserved xsd:string ;
  schema:hasGrowthInformation xsd:float ;
  schema:hasReference @<ReferenceShape> ;
  schema:hasTemperatureRangeEnd xsd:float ;
  schema:hasTemperatureRangeStart xsd:float ;
  schema:hasTestType xsd:string
}
<EnzymeShape> {
  a [ schema:Enzyme schema:GeneProduct schema:Protein ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasActivity xsd:string ;
  schema:hasECNumber xsd:string ? ;
  schema:hasEnzyme xsd:string ? ;
  schema:hasReference @<ReferenceShape>
}
<GCContentShape> {
  a [ schema:GCContent schema:MolecularProperty schema:PropertyOrAttribute ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasGCContentRangeEnd xsd:float ;
  schema:hasGCContentRangeStart xsd:float ;
  schema:hasGCInformation xsd:float ;
  schema:hasGCMethod xsd:string ;
  schema:hasReference @<ReferenceShape>
}
<GramStainShape> {
  a [ schema:CellMorphology schema:GramStain schema:MicrobialPhenotype schema:Phenotype ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasGramStain xsd:string ;
  schema:hasPhenotypeInformation xsd:string ;
  schema:hasReference @<ReferenceShape>
}
<HalophilyShape> {
  a [ schema:MetabolicPhenotype schema:Phenotype schema:SaltTolerance ] ;
  schema:describesStrain @<StrainShape> ;
  schema:hasReference @<ReferenceShape>
}
<IsolationShape> {
  a [ schema:IsolationInformation schema:IsolationSource schema:Origin ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape>
}
<LocationShape> {
  a [ schema:LocationOfOrigin schema:Origin ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasCountry xsd:string ;
  schema:hasLatitude xsd:float ;
  schema:hasLocation xsd:float ;
  schema:hasLongitude xsd:float
}
<OxygenToleranceShape> {
  a [ schema:MetabolicPhenotype schema:OxygenTolerance schema:Phenotype ] ;
  schema:describesStrain @<StrainShape> ;
  schema:hasGrowthInformation xsd:string ;
  schema:hasOxygenTolerance xsd:string ;
  schema:hasReference @<ReferenceShape>
}
<RiskAssessmentShape> {
  a [ schema:RiskAssessment ] ;
  rdfs:comment xsd:string ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasBiosafetyLevel xsd:string ;
  schema:hasReference @<ReferenceShape>
}
<Sequence16SShape> {
  a [ schema:16SSequence schema:NucleotideSequence schema:RNASequence schema:rRNASequence ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:fromSequenceDB xsd:string ;
  schema:hasReference @<ReferenceShape> ;
  schema:hasSequenceAccession xsd:string ;
  schema:hasSequenceInformation xsd:string ;
  schema:hasSequenceLength xsd:integer ;
  schema:hasTaxID xsd:integer
}
<SequenceGenomesShape> {
  a [ schema:DNASequence schema:GenomeSequence schema:NucleotideSequence ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:fromSequenceDB xsd:string ;
  schema:hasAssemblyLevel xsd:string ;
  schema:hasReference @<ReferenceShape> ;
  schema:hasSequenceAccession xsd:string ;
  schema:hasSequenceInformation xsd:string ;
  schema:hasTaxID xsd:integer
}
<StrainDesignationShape> {
  a [ schema:Identifier schema:OrganismIdentifier schema:StrainDesignation schema:StrainNumber ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasReference @<ReferenceShape>
}
<ReferenceShape> {
  a [ schema:Reference ] ;
  dct:creator xsd:string ;
  rdfs:seeAlso IRI ;
  schema:hasBibliographicInformation xsd:string ;
  schema:hasCatalogueID xsd:string ;
  schema:hasCatalogueInformation xsd:string ;
  schema:hasCatalogueInstitution xsd:string ;
  schema:hasDocumentType xsd:string
}
<EntichmentShape> {
  a [ schema:EnrichmentProcedure schema:IsolationInformation schema:IsolationProcedures schema:Origin ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape>
}
<NutritionTypeShape> {
  a [ schema:MetabolicPhenotype schema:NutritionType schema:Phenotype ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasReference @<ReferenceShape>
}
<PathogenicityShape> {
  a [ schema:ConceptualEntity schema:Pathogenicity ] ;
  schema:describesStrain @<StrainShape> ;
  schema:hasReference @<ReferenceShape> ;
  schema:isAnimalPathogen xsd:string ;
  schema:isHumanPathogen xsd:string ;
  schema:isPathogen xsd:string ;
  schema:isPlantPathogen xsd:string
}
<PigmentationShape> {
  a [ schema:CellMorphology schema:CellPigmentation schema:MicrobialPhenotype schema:Phenotype ] ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasPigmentInformation xsd:trueclass ;
  schema:hasPigmentName xsd:string ;
  schema:hasPigmentProduction xsd:trueclass ;
  schema:hasReference @<ReferenceShape>
}
<SporeFormationShape> {
  a [ schema:MicrobialPhenotype schema:Phenotype schema:SporeFormation ] ;
  rdfs:comment xsd:string ;
  rdfs:label xsd:string ;
  schema:describesStrain @<StrainShape> ;
  schema:hasAbility xsd:trueclass ;
  schema:hasReference @<ReferenceShape>
}