TogoMCP

PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX skos: <http://www.w3.org/2004/02/skos/core#> PREFIX dct: <http://purl.org/dc/terms/> PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> PREFIX obo: <http://purl.obolibrary.org/obo/> PREFIX gtdb: <http://identifiers.org/gtdb/> PREFIX taxid: <http://identifiers.org/taxonomy/> PREFIX biosample: <http://identifiers.org/biosample/> PREFIX bioproject: <http://identifiers.org/bioproject/> PREFIX gca: <http://identifiers.org/insdc.gca/> PREFIX ncbigenome: <http://www.ncbi.nlm.nih.gov/datasets/genome/> <GtdbStrainShape> { a [ gtdb:Taxon ] ; rdfs:subClassOf @<GtdbSpeciesShape> ; gtdb:rank IRI ; rdfs:seeAlso IRI ; rdfs:seeAlso IRI ; rdfs:seeAlso IRI ; rdfs:seeAlso IRI ; rdfs:seeAlso IRI ; gtdb:ambiguous_bases xsd:integer ; gtdb:checkm2_completeness xsd:integer ; gtdb:checkm2_contamination xsd:integer ; gtdb:checkm2_model xsd:string ; gtdb:checkm_completeness xsd:float ; gtdb:checkm_contamination xsd:float ; gtdb:checkm_marker_count xsd:integer ; gtdb:checkm_marker_lineage xsd:string ; gtdb:checkm_marker_set_count xsd:integer ; gtdb:checkm_strain_heterogeneity xsd:integer ; gtdb:coding_bases xsd:integer ; gtdb:coding_density xsd:float ; gtdb:contig_count xsd:integer ; gtdb:gc_count xsd:integer ; gtdb:gc_percentage xsd:float ; gtdb:genome_size xsd:integer ; gtdb:gtdb_genome_representative xsd:string ; gtdb:gtdb_representative xsd:string ; gtdb:gtdb_taxonomy xsd:string ; gtdb:gtdb_type_designation_ncbi_taxa xsd:string ; gtdb:gtdb_type_designation_ncbi_taxa_sources xsd:string ; gtdb:gtdb_type_species_of_genus xsd:string ; gtdb:l50_contigs xsd:integer ; gtdb:l50_scaffolds xsd:integer ; gtdb:longest_contig xsd:integer ; gtdb:longest_scaffold xsd:integer ; gtdb:lsu_23s_contig_len xsd:integer ; gtdb:lsu_23s_count xsd:integer ; gtdb:lsu_23s_length xsd:integer ; gtdb:lsu_23s_query_id xsd:string ; gtdb:lsu_5s_contig_len xsd:integer ; gtdb:lsu_5s_count xsd:integer ; gtdb:lsu_5s_length xsd:integer ; gtdb:lsu_5s_query_id xsd:string ; gtdb:lsu_silva_23s_blast_align_len xsd:integer ; gtdb:lsu_silva_23s_blast_bitscore xsd:integer ; gtdb:lsu_silva_23s_blast_evalue xsd:integer ; gtdb:lsu_silva_23s_blast_perc_identity xsd:integer ; gtdb:lsu_silva_23s_blast_subject_id xsd:string ; gtdb:lsu_silva_23s_taxonomy xsd:string ; gtdb:mean_contig_length xsd:integer ; gtdb:mean_scaffold_length xsd:integer ; gtdb:mimag_high_quality xsd:string ; gtdb:mimag_low_quality xsd:string ; gtdb:mimag_medium_quality xsd:string ; gtdb:n50_contigs xsd:integer ; gtdb:n50_scaffolds xsd:integer ; gtdb:ncbi_assembly_level xsd:string ; gtdb:ncbi_assembly_name xsd:string ; gtdb:ncbi_assembly_type xsd:string ; gtdb:ncbi_bioproject xsd:string ; gtdb:ncbi_biosample xsd:string ; gtdb:ncbi_contig_count xsd:integer ; gtdb:ncbi_contig_n50 xsd:integer ; gtdb:ncbi_country xsd:string ; gtdb:ncbi_date xsd:date ; gtdb:ncbi_genbank_assembly_accession xsd:string ; gtdb:ncbi_genome_category xsd:string ; gtdb:ncbi_genome_representation xsd:string ; gtdb:ncbi_isolate xsd:string ; gtdb:ncbi_isolation_source xsd:string ; gtdb:ncbi_lat_lon xsd:string ; gtdb:ncbi_molecule_count xsd:integer ; gtdb:ncbi_ncrna_count xsd:integer ; gtdb:ncbi_organism_name xsd:string ; gtdb:ncbi_protein_count xsd:string ; gtdb:ncbi_refseq_category xsd:string ; gtdb:ncbi_rrna_count xsd:integer ; gtdb:ncbi_scaffold_count xsd:integer ; gtdb:ncbi_scaffold_l50 xsd:integer ; gtdb:ncbi_scaffold_n50 xsd:integer ; gtdb:ncbi_scaffold_n75 xsd:integer ; gtdb:ncbi_scaffold_n90 xsd:integer ; gtdb:ncbi_seq_rel_date xsd:date ; gtdb:ncbi_spanned_gaps xsd:integer ; gtdb:ncbi_species_taxid xsd:integer ; gtdb:ncbi_ssu_count xsd:integer ; gtdb:ncbi_strain_identifiers xsd:string ; gtdb:ncbi_submitter xsd:string ; gtdb:ncbi_taxid xsd:string ; gtdb:ncbi_taxonomy_string xsd:string ; gtdb:ncbi_taxonomy_unfiltered xsd:string ; gtdb:ncbi_total_gap_length xsd:integer ; gtdb:ncbi_total_length xsd:integer ; gtdb:ncbi_translation_table xsd:integer ; gtdb:ncbi_trna_count xsd:integer ; gtdb:ncbi_type_material_designation xsd:string ; gtdb:ncbi_ungapped_length xsd:integer ; gtdb:ncbi_unspanned_gaps xsd:integer ; gtdb:ncbi_wgs_master xsd:string ; gtdb:protein_count xsd:integer ; gtdb:scaffold_count xsd:integer ; gtdb:ssu_contig_len xsd:integer ; gtdb:ssu_count xsd:integer ; gtdb:ssu_gg_blast_align_len xsd:string ; gtdb:ssu_gg_blast_bitscore xsd:string ; gtdb:ssu_gg_blast_evalue xsd:string ; gtdb:ssu_gg_blast_perc_identity xsd:string ; gtdb:ssu_gg_blast_subject_id xsd:string ; gtdb:ssu_gg_taxonomy xsd:string ; gtdb:ssu_length xsd:integer ; gtdb:ssu_query_id xsd:string ; gtdb:ssu_silva_blast_align_len xsd:integer ; gtdb:ssu_silva_blast_bitscore xsd:integer ; gtdb:ssu_silva_blast_evalue xsd:integer ; gtdb:ssu_silva_blast_perc_identity xsd:integer ; gtdb:ssu_silva_blast_subject_id xsd:string ; gtdb:ssu_silva_taxonomy xsd:string ; gtdb:total_gap_length xsd:integer ; gtdb:trna_aa_count xsd:integer ; gtdb:trna_count xsd:integer ; gtdb:trna_selenocysteine_count xsd:integer } <GtdbSpeciesShape> { a [ gtdb:Taxon ] ; rdfs:subClassOf @<GtdbGenusShape> ; gtdb:rank IRI ; skos:altLabel xsd:string } <GtdbGenusShape> { a [ gtdb:Taxon ] ; rdfs:subClassOf xsd:string ; gtdb:rank IRI ; skos:altLabel xsd:string } <GtdbsFamilyShape> { a [ gtdb:Taxon ] ; rdfs:subClassOf xsd:string ; gtdb:rank IRI ; skos:altLabel xsd:string } <GtdbsOrderShape> { a [ gtdb:Taxon ] ; rdfs:subClassOf xsd:string ; gtdb:rank IRI ; skos:altLabel xsd:string } <GtdbsClassShape> { a [ gtdb:Taxon ] ; rdfs:subClassOf xsd:string ; gtdb:rank IRI ; skos:altLabel xsd:string } <GtdbsPhylumShape> { a [ gtdb:Taxon ] ; rdfs:subClassOf xsd:string ; gtdb:rank IRI ; skos:altLabel xsd:string } <GtdbsDomainShape> { a [ gtdb:Taxon ] ; gtdb:rank IRI ; skos:altLabel xsd:string }